Syntax Warning with FlashDevelop [resolved]

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Trying to use FlashDevelop as my IDE and I think I followed all the instructions correctly. I managed to get the sample project (rotating sprite following the cursor) after installing hxcpp but I constantly get this warning:

C:\HaxeToolkit\haxe\lib\snow/git/snow/io/IOSystem.hx:12: characters 19-37 : Module does not define type IOSystem

I'm not sure what is wrong with my setup, as I can F4 into IOSystem and takes me straight into the native/io/IOSystem.hx file. I don't get any compiler errors, so I assume there must be some sort of mismatch between the parser and compiler flags but I'm unsure where to start looking.

Thanks for any help.